rs220409363 SNP Detail

Summary

• ID
  rs220409363
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:20988740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTAAGTAAG AAGTTAGCCA TGCTAATAAC
  AAAAGTAGGT ATGCCAGACA TTTGTTTGTG GTGCTGTCGA GGACAGATAG GCAGATAAAG
  GGAAGTCATG GTTAAAAAGC TAGGACCCAT AATGGTCTCA CAACATGTCA GGACTTCCCA
  Y
  GGCACACCAT ACAAGAAGAA AGAAGAAAAT GGAAAAACAA AAAGAAAAGA AACTATAATT
  CGGGTGGGAA CGGGCAGGCA GACTCTGTTC AAAACACTCA AGTCGTTGAA CTCTTGGGGT
  GGGAGAGCAG GGTCTATCTG TGCAGTATTG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319654655	CHEV_1_20908597	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220409363					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:20988740 () rs orientation: forward

Symbol	Name	Function Class
Paqr8	progestin and adipoQ receptor family member VIII	Intron
Rr407023	regulatory region 407023	1442 bp proximal
Tssr6058	transcription start site region 6058	662 bp downstream
Tssr6059	transcription start site region 6059	657 bp downstream