rs220413339 SNP Detail

Summary

• ID
  rs220413339
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142130551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAGGCTG GATGACTGCC
  CTTCTGTCCT CTCCATCACA CCGGACCATG TCATGTCTTT CTGTCACATT GACCACACCT
  GTCATCCTCG CCTTCAGTGA CTGGCAGGCA CATCCACCTC TGCTGGAGAC CTGGCTATAG
  GGAGAAATGA AGACATGAGT TAATTGAACT TGCGTGGGAG GAGACTGGGT GACCACGAGC
  R
  GGACAGACAC TTACCCTAGT CTCCAGTCCG AGCTCTTCGA GACACCGATC ACTGCTCCGT
  CGCCGCCCGC AAGGCCCTCC TTGGCCACGG ACTCTGGAGG CCAGTGCCTC CCTGGCTCAC
  CACCCCAGCT ACTCGCTCTA CCTGCACCCA ACCTCCCTCC CTAGAAACTC ATTCATTCTG
  CCCCGCCTGC CTCGCCTCGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373453166	MGP_WTSI_7_149762719	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220413339					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373453166	MGP_WTSI_7_149762719	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142130551 () rs orientation: forward

Symbol	Name	Function Class
Gm56420	predicted gene, 56420	39 bp upstream
Gm56421	predicted gene, 56421	1035 bp upstream
H19	H19, imprinted maternally expressed transcript	within coordinates
Mir675	microRNA 675	250 bp downstream
Rr658231	regulatory region 658231	1321 bp proximal
Tssr2460	transcription start site region 2460	429 bp upstream
Tssr2461	transcription start site region 2461	1097 bp upstream
Tssr70212	transcription start site region 70212	1280 bp downstream
Tssr70213	transcription start site region 70213	743 bp downstream
Tssr70214	transcription start site region 70214	161 bp downstream
Tssr70215	transcription start site region 70215	134 bp upstream
Tssr70216	transcription start site region 70216	171 bp upstream
Tssr70217	transcription start site region 70217	228 bp upstream
Tssr70218	transcription start site region 70218	559 bp upstream
Tssr70219	transcription start site region 70219	598 bp upstream
Tssr70220	transcription start site region 70220	691 bp upstream
Tssr70221	transcription start site region 70221	772 bp upstream
Tssr70222	transcription start site region 70222	787 bp upstream
Tssr70223	transcription start site region 70223	959 bp upstream
Tssr70224	transcription start site region 70224	1016 bp upstream
Tssr70225	transcription start site region 70225	1054 bp upstream
Tssr70226	transcription start site region 70226	1151 bp upstream
Tssr70227	transcription start site region 70227	1223 bp upstream
Tssr70228	transcription start site region 70228	1246 bp upstream
Tssr75813	transcription start site region 75813	1237 bp upstream
Tssr75814	transcription start site region 75814	1185 bp upstream
Tssr75815	transcription start site region 75815	1021 bp upstream
Tssr75816	transcription start site region 75816	960 bp upstream
Tssr75817	transcription start site region 75817	797 bp upstream
Tssr75818	transcription start site region 75818	721 bp upstream
Tssr75819	transcription start site region 75819	551 bp upstream
Tssr75820	transcription start site region 75820	500 bp upstream
Tssr75821	transcription start site region 75821	487 bp upstream
Tssr75822	transcription start site region 75822	326 bp upstream
Tssr75823	transcription start site region 75823	283 bp upstream
Tssr75824	transcription start site region 75824	250 bp upstream
Tssr75825	transcription start site region 75825	126 bp upstream
Tssr75826	transcription start site region 75826	78 bp upstream
Tssr75827	transcription start site region 75827	58 bp upstream
Tssr75828	transcription start site region 75828	73 bp downstream
Tssr75829	transcription start site region 75829	550 bp downstream
Tssr75830	transcription start site region 75830	580 bp downstream
Tssr75831	transcription start site region 75831	600 bp downstream
Tssr75832	transcription start site region 75832	673 bp downstream
Tssr75833	transcription start site region 75833	750 bp downstream
Tssr75834	transcription start site region 75834	1016 bp downstream
Tssr75835	transcription start site region 75835	1052 bp downstream
Tssr75836	transcription start site region 75836	1074 bp downstream
Tssr75837	transcription start site region 75837	1094 bp downstream
Tssr75838	transcription start site region 75838	1171 bp downstream
Tssr75839	transcription start site region 75839	1184 bp downstream
Tssr75840	transcription start site region 75840	1226 bp downstream
Tssr75841	transcription start site region 75841	1228 bp downstream
Tssr75842	transcription start site region 75842	1265 bp downstream
Tssr75843	transcription start site region 75843	1272 bp downstream
Tssr75844	transcription start site region 75844	1279 bp downstream
Tssr75845	transcription start site region 75845	1325 bp downstream