rs220418615 SNP Detail

Summary

• ID
  rs220418615
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130039743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    agtcctgga accaaggtgg cccccgcgga
  acatgaggca gaagcctctc cagccgggtg gacacctgtg ctctgaccag gaaggtggcc
  ggttgtctTC AACCTATATT TATGATTATT TGCTTCCTAT GTTCCAGACA TGCTTCTAAG
  C
  ATAGGAAATA AAAGGGTGAA CAAGCAATAT CTGTTTCCTC AGTGAAAAGT AGAACTGCCA
  CATAAACAGC CAGATGTAAA CACATAAGTT AACATATAAT GAGATGACTT CTCTTTAAAT
  GCCAAGAATA AAACCTAAGT GGGTTTGGAG                                 
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319970930	CHEV_1_132008583	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220418615					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130039743 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr417893	regulatory region 417893			657 bp proximal
Thsd7b	thrombospondin, type I, domain containing 7B			Intron
				Noncoding-Transcript-Variant