rs220420092 SNP Detail

Summary

• ID
  rs220420092
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123300883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGACCAC TTGTGGAACC
  ATGACCTTAC AGCAGCCCTT TTTAAATAGG AATGAAGGCC CAGAGACATC TGGTGGGAAT
  TTGGATCCCA ATAATCTCTG TGCAGAGGAA TCACCCCCTG GTTCCTAAGC TTCCCTAAAT
  AAGGCCTATC ATACTCTTGA GTGTGAGTCT CAGTACCTCA AATCCCAGAC ACAAAAGCCT
  M
  TAAGGTCACA AGTATCCCCT CAGCACCTGT CACAACACAC CCCCTAGCTG GTGTTACATA
  CTTGGCTTCT GGAGATTTGA AGTTGAATGG CACACACTAG AAGGCTTGGA GAGCAGCAAG
  CAAAAGATAC TTTTCATTAA GGGCAACCGT CTGTGGCTTA TTAATCACTC ATGTTCCAAG
  CCAACATTTA TCTTGCACCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359529391	MGP_WTSI_3_123210152	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220420092					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359529391	MGP_WTSI_3_123210152	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123300883 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	704 bp proximal
Prss12	serine protease 12 neurotrypsin (motopsin)	637 bp downstream
Rr397991	regulatory region 397991	200 bp downstream
Rr584523	regulatory region 584523	315 bp distal
Rr584524	regulatory region 584524	180 bp distal
Rr584525	regulatory region 584525	1140 bp proximal
Rr584526	regulatory region 584526	1685 bp proximal
Snhg8	small nucleolar RNA host gene 8	318 bp downstream
Snora24	small nucleolar RNA, H/ACA box 24	703 bp downstream
Tssr31551	transcription start site region 31551	1316 bp upstream
Tssr31552	transcription start site region 31552	1354 bp upstream
Tssr35502	transcription start site region 35502	1096 bp downstream
Tssr35503	transcription start site region 35503	1681 bp downstream