rs220423198 SNP Detail

Summary

• ID
  rs220423198
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67142984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATTCACTT TCAAGCATTT
  ACAAATACTC AAGCCTGACT CTTAAACCTT AAAATCATGG AACGTGAAAG GGAAAATGTT
  ACAATGTTGC CATCTTTTTT ATGGCTGCTG TATTCCCTGT CAGGATGTTG TCCTGAGAAG
  TTAAATTATC ATGTATTTTG GCAAGATGAC ATGTTTTTTT TTTTTTTTTT AATCAACATT
  M
  CCATCATCTG TCCAAATCTA AAGGTGAAAA ACCTGACAGA AGAGATGGCA GGCCTGGATG
  AAAATATCGC CAAGCTGACC AAGGAGAAGA AGGCCCTCCA GGAGGCCCAC CAGCAGACCC
  TGGATGACCT GCAGGCAGAG GAGGACAAAG TCAACACCCT GACCAAAGCC AAAACCAAGC
  TGGAACAGCA AGTGGATGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383730818	MGP_WTSI_11_67065660	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220423198					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383730818	MGP_WTSI_11_67065660	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67142984 () rs orientation: forward

Symbol	Name	Function Class
Myh4	myosin, heavy polypeptide 4, skeletal muscle	within coordinates
Tssr3526	transcription start site region 3526	1781 bp downstream
Tssr3527	transcription start site region 3527	1281 bp upstream
Tssr102188	transcription start site region 102188	1820 bp downstream
Tssr102189	transcription start site region 102189	1632 bp downstream
Tssr102190	transcription start site region 102190	1616 bp downstream
Tssr102191	transcription start site region 102191	1595 bp downstream
Tssr102192	transcription start site region 102192	1589 bp downstream
Tssr102193	transcription start site region 102193	1546 bp downstream
Tssr102194	transcription start site region 102194	1404 bp downstream
Tssr102195	transcription start site region 102195	1321 bp downstream
Tssr102196	transcription start site region 102196	1282 bp downstream
Tssr102197	transcription start site region 102197	1238 bp downstream
Tssr102198	transcription start site region 102198	1177 bp downstream
Tssr102199	transcription start site region 102199	423 bp downstream
Tssr102200	transcription start site region 102200	272 bp downstream
Tssr102201	transcription start site region 102201	1317 bp upstream
Tssr102202	transcription start site region 102202	1839 bp upstream
Tssr102203	transcription start site region 102203	1899 bp upstream
Tssr108528	transcription start site region 108528	1514 bp upstream
Tssr108529	transcription start site region 108529	1200 bp upstream
Tssr108530	transcription start site region 108530	1198 bp upstream
Tssr108531	transcription start site region 108531	1170 bp upstream
Tssr108532	transcription start site region 108532	400 bp upstream
Tssr108533	transcription start site region 108533	248 bp upstream
Tssr108534	transcription start site region 108534	438 bp downstream
Tssr108535	transcription start site region 108535	534 bp downstream
Tssr108536	transcription start site region 108536	1886 bp downstream
Tssr108537	transcription start site region 108537	1898 bp downstream