rs220423678 SNP Detail

Summary

• ID
  rs220423678
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:59788593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCATGCCT GGCTGCAGGA
  CCATTTTAAC TAAAACAAAA ATAAAAGGAC TGAGCGTGGA ATACACACCC ATCATCCTGT
  CACTTAGGTA GATCAGTTCA CGAGGCAGGA AGATCAGTTC AAAGGCCAAC TTTGGCTACA
  TGGTCAGTTT GAGGCCAGCC TGGGAGACTG CCTTAGGCAA AACCGAAGAA AAAAATAGTA
  G
  CATTAACTGC AAGAAATGCC TGCAGGATAC CTGGGATCTC AAGATTTAGG GGATGAAGGC
  AGCAAAGTCA ATTCAAGGCC TTAGCTGCAC AGTGAGTTCC GAGGTCAACC AGGCTACACG
  AGAGCTTATC TCAAAAAGCA AAACAAAAAA GTGTCAGCCC TGGATTCCTG ACATCGCCAG
  AAAGAGTGGC TTCAGAACAG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324357475	CHEV_13_59742140	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220423678					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:59788593 () rs orientation: forward

Symbol	Name	Function Class
Golm1	golgi membrane protein 1	within coordinates
Tssr4093	transcription start site region 4093	542 bp upstream
Tssr122874	transcription start site region 122874	607 bp upstream
Tssr122875	transcription start site region 122875	590 bp upstream