rs220427081 SNP Detail

Summary

• ID
  rs220427081
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:99540659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCT CCCAAAAATG ATACATAGAG
  T
  AGATCACCTC TGCCTTCTAA TAAGG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324792957	CHEV_14_99702442	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220427081					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:99540659 () rs orientation: forward

Symbol	Name	Function Class
Klf5	Kruppel-like transcription factor 5	within coordinates
Rr291012	regulatory region 291012	1259 bp distal
Rr297571	regulatory region 297571	658 bp distal
Tssr126883	transcription start site region 126883	1561 bp downstream
Tssr126884	transcription start site region 126884	1537 bp downstream
Tssr126885	transcription start site region 126885	1520 bp downstream
Tssr126886	transcription start site region 126886	1409 bp downstream
Tssr126887	transcription start site region 126887	1310 bp downstream
Tssr126888	transcription start site region 126888	1195 bp downstream