rs220430765 SNP Detail

Summary

• ID
  rs220430765
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22714985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATGACTG GAACATTGAA
  TTCTGAAGGT TGAGGGCCAG GAGATGCTGG GTTTCCATCC CTGCCGGACT AAAGTTAGCC
  TTTTGGCTTC CTGTTTCCTC TCTGAAAACT TAACCTCTGC CCCATGCGAT GGACAACGAT
  CTCTTGCCAA TACTTTGAGA AGACTCAGAT CTTTCATCTG CAGCCCATCG TCAGAACTCA
  M
  TCCTTCCAAT TGCCCAGGGC CACACGTAGT CCGTGTGGAT TTGTGTTCTC TCAAACTGTG
  CCAGACCATA GCTTCTCCTC TCCATCCCTC CCACCCTCCC TCTTACCTTC CTTCCTCCTC
  TCCTTTGCTC CCTCCCTCCC TCTCCCTCCT CCTCTCTGTC ACTTCCTCCC TCTATCCCAC
  CTCTCCTTCC CCCCTCCCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395628392	MGP_WTSI_16_22896308	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220430765					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395628392	MGP_WTSI_16_22896308	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22714985 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Gm30505	predicted gene, 30505	1849 bp upstream
Tssr4819	transcription start site region 4819	894 bp downstream
Tssr4820	transcription start site region 4820	278 bp downstream
Tssr137563	transcription start site region 137563	1994 bp downstream
Tssr137564	transcription start site region 137564	1964 bp downstream
Tssr137565	transcription start site region 137565	1827 bp downstream
Tssr137566	transcription start site region 137566	1818 bp downstream
Tssr137567	transcription start site region 137567	1450 bp downstream
Tssr137568	transcription start site region 137568	1419 bp downstream
Tssr137569	transcription start site region 137569	1398 bp downstream
Tssr137570	transcription start site region 137570	1381 bp downstream
Tssr137571	transcription start site region 137571	1043 bp downstream
Tssr137572	transcription start site region 137572	944 bp downstream
Tssr137573	transcription start site region 137573	934 bp downstream
Tssr137574	transcription start site region 137574	915 bp downstream
Tssr137575	transcription start site region 137575	905 bp downstream
Tssr137576	transcription start site region 137576	220 bp downstream
Tssr137577	transcription start site region 137577	187 bp upstream
Tssr137578	transcription start site region 137578	258 bp upstream
Tssr137579	transcription start site region 137579	1880 bp upstream
Tssr137580	transcription start site region 137580	1930 bp upstream
Tssr140504	transcription start site region 140504	1843 bp upstream
Tssr140505	transcription start site region 140505	1794 bp upstream
Tssr140506	transcription start site region 140506	1374 bp upstream
Tssr140507	transcription start site region 140507	1011 bp upstream
Tssr140508	transcription start site region 140508	969 bp upstream
Tssr140509	transcription start site region 140509	951 bp upstream
Tssr140510	transcription start site region 140510	903 bp upstream
Tssr140511	transcription start site region 140511	889 bp upstream
Tssr140512	transcription start site region 140512	322 bp downstream
Tssr140513	transcription start site region 140513	333 bp downstream
Tssr140514	transcription start site region 140514	366 bp downstream
Tssr140515	transcription start site region 140515	1941 bp downstream
Tssr140516	transcription start site region 140516	1960 bp downstream