rs220431830 SNP Detail

Summary

• ID
  rs220431830
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:103062322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGGTGGG GACCACCATG
  GGCAACGCGG CTGGCAGCGC CGAACAGCCC GCGGGCCCCA CCGCGTCGCC CCCGAAGCAG
  CCAGCCGTCC CCAAGCAACC AATGCCGGCG GCCGGGGAGC TGGAGGAGAG GTTCACGCGG
  GTCTTGGTGA GTGTGACCTG ATGCGCACCA GGAGCCAGGG ATGACAGGGG CTCCGCATGC
  D
  TCCCCGCCTC TTGGGACTCA GGTGCGGCTT GGAGATCCCT GGTCCACCTG CTGTCCCTCC
  AGAGGGGTAG GAGTAACACT GTCATCTTTC AGAGTGACTT GGCACCCCCC CCCCCAAGAA
  ACTTTCTTTA GCCCCCTCCA GGAAGCTTTC TTAAGAGACC CCCCCATCGA CCCCCTTCCT
  ATGCTCCTAG TTCTAAAGGT                                            
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384517812	MGP_WTSI_11_103032810	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220431830					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384517812	MGP_WTSI_11_103032810	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:103062322 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3957	CpG island 3957	within coordinates
Fmnl1	formin-like 1	within coordinates
Gm51919	predicted gene, 51919	986 bp upstream
Rr457538	regulatory region 457538	1234 bp distal
Rr457539	regulatory region 457539	173 bp distal
Rr457540	regulatory region 457540	558 bp distal
Rr457541	regulatory region 457541	425 bp proximal
Rr457542	regulatory region 457542	1615 bp proximal
Rr457543	regulatory region 457543	1892 bp proximal
Tssr105316	transcription start site region 105316	1069 bp downstream
Tssr105317	transcription start site region 105317	1000 bp downstream
Tssr105318	transcription start site region 105318	756 bp downstream
Tssr105319	transcription start site region 105319	666 bp downstream
Tssr105320	transcription start site region 105320	635 bp downstream
Tssr105321	transcription start site region 105321	518 bp downstream
Tssr105322	transcription start site region 105322	487 bp downstream
Tssr105323	transcription start site region 105323	374 bp downstream