rs220436031 SNP Detail

Summary

• ID
  rs220436031
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:105285726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTCCTGAGA CCCATGATGG CTCTGTATGA
  GCTAATGAAT CCGTGTTGGC AGCTGGTCCT ACTTGCTTTG TCCCACGTGT ACAACTTGTG
  AATTGGTGTT CCAATCAGGC TATTAACACA TCgggaggcg ggggcgcggg ggggggggcg
  S
  gggggggACC TGCATCCGGG AGACCCACAA AGCTTGCAGT CTCTGGATCC CAGTAGGAGC
  TCTGCTTCCT CCAGTCACCA GGCAGACTCT TGCTCCATTG TTCCCTTATC ACCTCTACAG
  CACCCACAGA GGCTCTGCAT GCATGTCTTA                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319882715	CHEV_1_107254578	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220436031					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:105285726 () rs orientation: forward

Symbol	Name	Function Class
Cpgi626	CpG island 626	980 bp distal
D1Mit307	DNA segment, Chr 1, Massachusetts Institute of Technology 307	1850 bp proximal
Gm17634	predicted gene, 17634	within coordinates
Rnf152	ring finger protein 152	1291 bp upstream
Rr416387	regulatory region 416387	1984 bp distal
Rr416388	regulatory region 416388	1342 bp distal
Rr416389	regulatory region 416389	1953 bp distal
Rr416390	regulatory region 416390	1421 bp distal
Rr416391	regulatory region 416391	1259 bp distal
Rr416392	regulatory region 416392	669 bp distal
Rr416393	regulatory region 416393	1023 bp proximal
Tssr8255	transcription start site region 8255	1233 bp downstream
Tssr8256	transcription start site region 8256	1215 bp downstream
Tssr8257	transcription start site region 8257	1144 bp downstream
Tssr8258	transcription start site region 8258	912 bp downstream
Tssr13126	transcription start site region 13126	1485 bp upstream
Tssr13127	transcription start site region 13127	1350 bp upstream
Tssr13128	transcription start site region 13128	1287 bp upstream
Tssr13129	transcription start site region 13129	1213 bp upstream
Tssr13130	transcription start site region 13130	1038 bp upstream