rs220436950 SNP Detail

Summary

• ID
  rs220436950
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:30496043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCTCTTC TGGTGAGAGT
  CCTCCTACAC TTCGGGGGAG GGGCCGCCCC TCTGTCAACA GCCCAACTCC ATCTCCAGTA
  CTTTGAGGCT CACTAGCCTT CGCACCTCCA GCCCAGCCTG AGTTTCCTTA TCTGCACAGT
  GGACTCCAGG AGGTGGGTGC TGGCACTGCC AGAAATGCTA GACCACTTTC CTCTTCTGGC
  R
  AGTGGCGGGG GGGGGGGGGG GGGGGGCAGG GATAGGGGTG GATGGAGTTG GGGGATGTGT
  CTGCTCAGGT GCCCACATCC CTGCAGAAAC GCACAGCTGA CCTGTCTTTT GGGTCACAAG
  CCCTCTAGTG CTGAGGTGGA AGTTCCCTTG AGAGTCAAAG CCCTGTGTAG GTCCGGAGGT
  AGGAAAGAGA GACTTGACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss353519452	MGP_WTSI_2_30461551	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs220436950					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353519452	MGP_WTSI_2_30461551	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30496043 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11442	CpG island 11442			896 bp distal
Cstad	CSA-conditional, T cell activation-dependent protein			Intron
				Noncoding-Transcript-Variant
Gm74685	predicted gene, 74685			within coordinates
Rr554367	regulatory region 554367			1600 bp distal
Rr554368	regulatory region 554368			99 bp distal
Rr554369	regulatory region 554369			within coordinates
Rr554370	regulatory region 554370			342 bp proximal
Rr554371	regulatory region 554371			597 bp proximal