rs220441789 SNP Detail

Summary

• ID
  rs220441789
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:21154321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGATACTTT GCTACCACTT
  TTTTGTTAAA GCAGGACCCA AATTCAGTTA AACTCAAACT CTAGAGTCCA ACAAAATAAT
  GAAAAGCTAT CTTTTTAAAT TTAATCTTTT CTCAATAAAA TAAGTGTTTC TGTCCTTCTG
  TCCAAAAGAA AATAAAAGTA TTTAAAGTTA GTGGTGAATA TACAGCCAGG TGTGGTGGCC
  Y
  ATGCCTTTGC AAATCCCAGC ACTCAGGAGG GCAGGCAGAT CCTCTGAAGT CACCCCAGTC
  TACATAGTGA TTCTAGGACA ACCGGGGCTA TACAAGAGAC CCTGTCTTGA AGACAAAACA
  TCAACATCTA ATCATCCCAT ATAGGTCATG GGAACTCTCT TCCCCACATC TTGATGTAAA
  GACTATCACT GTTTAAGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364204179	MGP_WTSI_5_20455141	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220441789					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364204179	MGP_WTSI_5_20455141	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:21154321 () rs orientation: forward

Symbol	Name	Function Class
A630072M18Rik	RIKEN cDNA A630072M18 gene	1666 bp upstream
Cpgi15559	CpG island 15559	1482 bp proximal
Rr1248	regulatory region 1248	702 bp proximal
Rr377666	regulatory region 377666	1454 bp upstream
Rr607829	regulatory region 607829	382 bp distal
Rr607830	regulatory region 607830	1176 bp proximal
Rsbn1l	round spermatid basic protein 1-like	within coordinates
Tssr45282	transcription start site region 45282	1448 bp upstream
Tssr45283	transcription start site region 45283	1607 bp upstream
Tssr45284	transcription start site region 45284	1633 bp upstream
Tssr45285	transcription start site region 45285	1660 bp upstream
Tssr45286	transcription start site region 45286	1711 bp upstream
Tssr45287	transcription start site region 45287	1848 bp upstream