rs220449726 SNP Detail

Summary

• ID
  rs220449726
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54799692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATGGCTG GAGACGGCAG
  CCTCTATGGG GCAGAGGCTC AGGGGCTGCA GATATTGGTT GACGGTCTCC ACGTCAGCCA
  CTCAGTTACT CCCGCTCCCC CATCCTCACC CCAGTTTGGG GTTTAATGGA ATGAGGGGGA
  GGGTACAGGA AATAGGAGGC TGTGGGTAAC TGTCTGGGCA GCACATTGAA GGGTAGAGAT
  R
  TGGGGTGGGT ATAGAGAGGG GCTGAGATGG CAGATACACA CTGGGCCTAT GTATGTCCAT
  GCAAGTCGTG CGCTTGATAA AGGAGATTCC CAGCCCCCTT CCCTCAAGTC TCTTCATCTT
  AGTTCTGAGC TATGTGTGGC TGCTCTGGAC TCACTCAAGT ACACTCCTCC CAGGTATGTT
  CGACCAGGTG GGGGCTTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383428901	MGP_WTSI_11_54722368	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220449726					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383428901	MGP_WTSI_11_54722368	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54799692 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	within coordinates
Tnip1	TNFAIP3 interacting protein 1	1919 bp downstream
Tssr3502	transcription start site region 3502	775 bp downstream
Tssr3503	transcription start site region 3503	1249 bp upstream
Tssr101556	transcription start site region 101556	1736 bp downstream
Tssr101557	transcription start site region 101557	1706 bp downstream
Tssr101558	transcription start site region 101558	1689 bp downstream
Tssr101559	transcription start site region 101559	1666 bp downstream
Tssr101560	transcription start site region 101560	1620 bp downstream
Tssr101561	transcription start site region 101561	309 bp downstream
Tssr101562	transcription start site region 101562	262 bp downstream
Tssr101563	transcription start site region 101563	250 bp downstream
Tssr101564	transcription start site region 101564	229 bp downstream
Tssr101565	transcription start site region 101565	186 bp upstream
Tssr101566	transcription start site region 101566	236 bp upstream
Tssr101567	transcription start site region 101567	597 bp upstream
Tssr101568	transcription start site region 101568	673 bp upstream
Tssr101569	transcription start site region 101569	756 bp upstream
Tssr101570	transcription start site region 101570	778 bp upstream
Tssr101571	transcription start site region 101571	832 bp upstream
Tssr101572	transcription start site region 101572	927 bp upstream
Tssr101573	transcription start site region 101573	964 bp upstream
Tssr101574	transcription start site region 101574	978 bp upstream
Tssr101575	transcription start site region 101575	1026 bp upstream
Tssr101576	transcription start site region 101576	1040 bp upstream
Tssr101577	transcription start site region 101577	1069 bp upstream
Tssr101578	transcription start site region 101578	1152 bp upstream
Tssr108006	transcription start site region 108006	1581 bp upstream
Tssr108007	transcription start site region 108007	292 bp upstream
Tssr108008	transcription start site region 108008	231 bp upstream
Tssr108009	transcription start site region 108009	215 bp upstream
Tssr108010	transcription start site region 108010	195 bp downstream
Tssr108011	transcription start site region 108011	791 bp downstream
Tssr108012	transcription start site region 108012	825 bp downstream
Tssr108013	transcription start site region 108013	919 bp downstream
Tssr108014	transcription start site region 108014	926 bp downstream
Tssr108015	transcription start site region 108015	1009 bp downstream
Tssr108016	transcription start site region 108016	1061 bp downstream
Tssr108017	transcription start site region 108017	1112 bp downstream
Tssr108018	transcription start site region 108018	1127 bp downstream
Tssr108019	transcription start site region 108019	1163 bp downstream
Tssr108020	transcription start site region 108020	1219 bp downstream
Tssr108021	transcription start site region 108021	1239 bp downstream
Tssr108022	transcription start site region 108022	1250 bp downstream
Tssr108023	transcription start site region 108023	1503 bp downstream