rs220451119 SNP Detail

Summary

• ID
  rs220451119
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138231043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATTGGTT TGTGCTGTAA
  CCAACCCTGA AGCTCAAAAC AGGATATTTA GGTTGTCTTT TTCCTTTCTT TGGATAGAGA
  TTCTCCTGTT TCTTTGGGTG GCCTAGAACT TGCCATGTCA CTGAATTTAA AGTCCTGATC
  CTCCAGCATG CTGGGTTTAT GTGGTGTTGG GGGGAATCTA GGCTGGATGA ACACTCTATC
  R
  ACTGAGCTAC AACTCAGCAC CCTAATGCTG TCTTCTCATA GAAATTAACC AGACATCACT
  TTACAGACAA CAGAAAATAA GGGGTCAATT ATAATTACTT TGGTTAGTGT TAACAGATTT
  GTACATAGAA ATTCACCTAT GTGTTTAGTT CATAGAGCTA TGTCTACTTG AGAATCTACT
  CACGCCAACT TAAACAGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359912447	MGP_WTSI_3_138188246	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220451119					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359912447	MGP_WTSI_3_138188246	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138231043 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13876	CpG island 13876	922 bp proximal
Eif4e	eukaryotic translation initiation factor 4E	909 bp upstream
Gm64814	predicted gene, 64814	within coordinates
Mir1956	microRNA 1956	1139 bp upstream
Rr398072	regulatory region 398072	1646 bp upstream
Rr586156	regulatory region 586156	609 bp proximal
Rr586157	regulatory region 586157	956 bp proximal
Rr586158	regulatory region 586158	1513 bp proximal
Rr586159	regulatory region 586159	1622 bp proximal
Tssr31989	transcription start site region 31989	892 bp upstream
Tssr31990	transcription start site region 31990	1136 bp upstream
Tssr31991	transcription start site region 31991	1156 bp upstream
Tssr31992	transcription start site region 31992	1193 bp upstream
Tssr31993	transcription start site region 31993	1241 bp upstream
Tssr31994	transcription start site region 31994	1280 bp upstream
Tssr31995	transcription start site region 31995	1338 bp upstream
Tssr31996	transcription start site region 31996	1962 bp upstream
Tssr35898	transcription start site region 35898	945 bp downstream
Tssr35899	transcription start site region 35899	1661 bp downstream
Tssr35900	transcription start site region 35900	1685 bp downstream