rs220459147 SNP Detail

Summary

• ID
  rs220459147
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106339823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGGGGGG CTGGGGGGGG
  AGGGGCGGTA AGGGGATCCA GGGGTCTAAC CCTTGCTCAA GGTTAAATTC TGCCTCTCTT
  CTAGCTGATT GGCTGTGTGA TCGGACGCCA GGGCAGCAAG ATCAGCGAGA TCCGGCAGAT
  GTCGGGGGCA CATATTAAGA TCGGGAACCA AGCGGAGGGT GCTGGGGAGC GGCATGTGAC
  Y
  ATCACTGGCT CACCGGTCTC CATCGCCCTG GCTCAGTACC TCATCACTGC CTGGTGAGCA
  TGGGGTGGGC AGCGGGGAGC ACAGGTTGGG GTGGAAGGGA GCACCTCCTG TGCTCTGGAG
  CAGTTCTCTG GTGCTCCTCA GCTCCTCCTT TCCTTTAGGT ATTCTACCTA AGACATCTAT
  GTTGCCTCAT TTACTACTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378830294	MGP_WTSI_9_106364955	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220459147					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378830294	MGP_WTSI_9_106364955	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106339823 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22267	CpG island 22267	within coordinates
Cpgi22268	CpG island 22268	1862 bp proximal
Gpr62	G protein-coupled receptor 62	1338 bp downstream
Pcbp4	poly(rC) binding protein 4	within coordinates
Tssr86911	transcription start site region 86911	1978 bp downstream
Tssr86912	transcription start site region 86912	1967 bp downstream
Tssr86913	transcription start site region 86913	1926 bp downstream
Tssr86914	transcription start site region 86914	729 bp downstream
Tssr86915	transcription start site region 86915	529 bp upstream
Tssr86916	transcription start site region 86916	633 bp upstream
Tssr86917	transcription start site region 86917	756 bp upstream
Tssr86918	transcription start site region 86918	889 bp upstream
Tssr86919	transcription start site region 86919	1159 bp upstream