rs220461180 SNP Detail

Summary

• ID
  rs220461180
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112685739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGAAAAGA TTTGTTGCTT
  TCACCTTAAT CTCTGTTTGC CCTGCAAGGA GGCTCATTGG TCCCGAGGGA CCTCCCCTTT
  TAGCACTTGC AACAGTGTTA GCAGCTATAG TTCTCTGGTA ACACCCTCCT CCTCCTTCAC
  TACCTCACCC CATACTCCTG AGGCCTGGAG TCTTCAGGCA AAAATGATGG CAGCTGTTGA
  M
  CTGCCCCAGC AAACAAGTAA GGACAGACCC CTCTTAAGGA CAGACCCCCT CCCTTAGGCG
  CCAGCCAGAG CAGCTTGGTC TGTGGTGTCT CCTTTTCACT CAACAGCCAA GGCCCTCTGA
  AGCCTGGCCA TTTCTCTACA CACTTCCTAT GTTTATTGTT TCTGAGCCTT TTAAAAGCCC
  CAAGAATGTG GTGACAAGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324170471	CHEV_12_113957516	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220461180					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112685739 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5179	CpG island 5179	1955 bp proximal
Gm46382	predicted gene, 46382	within coordinates
Gm59466	predicted gene, 59466	within coordinates
Rr473581	regulatory region 473581	1877 bp distal
Rr473582	regulatory region 473582	1966 bp distal
Rr473583	regulatory region 473583	1335 bp proximal
Tssr115398	transcription start site region 115398	49 bp downstream
Tssr115399	transcription start site region 115399	1800 bp upstream