rs220462323 SNP Detail

Summary

• ID
  rs220462323
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84468855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCTGATA CCCAGGACCT
  CCATGATGGA AGGAGAGAGC CAACTCCTGG AAGTTGTCCT CTGACCTTCA CGGGCACACG
  GTGCCACACA CAAACCCAAA CACTAAATAA ACAAGTCAAT AAATAAAACG TAATAAGGGG
  CCGGGCAGTG GTGGCGCATG CCTGTAATCC CAGCACTTGA GAGGCAGAGG CAGGCGGATT
  W
  CTGAGTTCGA GGCCAGCCTG GTCTAGAGAG TGAGTTCCAG GACAGCCAGG ACTGCACAGA
  GAAACCCTGT CTCAAAAAGC CAAAACAAAT AAACAAACAA AAAACGTAAT AAGGACTTAA
  AATAGAGGAA GAGAGAGCTT TGACCACGGG ACATGGCTTA CCACGGCAGG GCTTTTTGGT
  TACACGCACT GACCTTGCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375384497	MGP_WTSI_8_86266125	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220462323					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375384497	MGP_WTSI_8_86266125	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84468855 () rs orientation: forward

Symbol	Name	Function Class
Adgre5	adhesion G protein-coupled receptor E5	1043 bp upstream
Cpgi20655	CpG island 20655	536 bp distal
Gm46046	predicted gene, 46046	within coordinates
Tssr2619	transcription start site region 2619	1825 bp downstream
Tssr2620	transcription start site region 2620	929 bp downstream
Tssr2621	transcription start site region 2621	329 bp upstream
Tssr78291	transcription start site region 78291	1870 bp downstream
Tssr78292	transcription start site region 78292	1848 bp downstream
Tssr78293	transcription start site region 78293	1707 bp downstream
Tssr78294	transcription start site region 78294	1652 bp downstream
Tssr78295	transcription start site region 78295	1606 bp downstream
Tssr78296	transcription start site region 78296	1587 bp downstream
Tssr78297	transcription start site region 78297	792 bp downstream
Tssr82051	transcription start site region 82051	1794 bp upstream
Tssr82052	transcription start site region 82052	1036 bp upstream