rs220477229 SNP Detail

Summary

• ID
  rs220477229
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:55475145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTATTAGG CAGGACTACA
  TATTGAAACC TTCTTTAAAA AGTAAACAAA ACCCCTGACA AATAAACAAA CAACAACAGC
  AACGGAATAG AAAGGAAGGG AGGGAGGAAG GACCCCAGCA ACAGCACAAA TCAAATAGAA
  AATAACACAC TGGCAAGGAT GTGAAGGAAT TCCTAGCACA AGCACAGACT GGGGGAAGGG
  K
  GGGGGGGGGG GCGGCAATGT AAAATGATAC AGAGGCTATA GAAATAGCAT GTGGTTTGGT
  TTTTGTTTTT TTTTTAAATA TTTATTTATT TATCTATTTA GAAAACTCAA ACACAGAATT
  GTACACGACC CAACAATTCT ACTTCTGGTG AGATTGCCAA AAGTTTTAAA AGCAGTAATT
  GTGCAAATGT ACTCAGAGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	CZECHII/EiJ	DBA/2J	JF1/MsJ	MA/MyJ	PWK/PhJ
ss361597484	MGP_WTSI_4_55488017	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	CZECHII/EiJ	DBA/2J	JF1/MsJ	MA/MyJ	PWK/PhJ
rs220477229					SNP	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361597484	MGP_WTSI_4_55488017	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:55475145 () rs orientation: forward

Symbol	Name	Function Class
Gm12510	predicted gene 12510	within coordinates
Rr376520	regulatory region 376520	within coordinates
Tssr41779	transcription start site region 41779	234 bp downstream