rs220477496 SNP Detail

Summary

• ID
  rs220477496
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:25975212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTTGTTT AGTGATGTTC
  ACCACTAGTT TGGATTGTCT AGCTCCTATC CAGTTTGACC ACTGACTTTG TGACCAGGCA
  TAGCTCTCTG TCTACACATA GTGGCTGCTT AATCAATGTG TTTAATGAGT GAACACATAG
  CTAACTCTTG AATACCCCTT CTAAGCCGAG TTGCTCTAGG AGCCTAGGTA TTAACTTTTT
  R
  TAATGAAAGT TATTTTATTC CACAGGTATT CTAATGAGTA TGGGTTTCAA TCATGTGGCC
  ACTACTCCCA TTCTTGCTTG TCACAGCACT CATATAACCT CACTAAGCTC TTCCATTTGC
  TTGACCAGAT GCCCCAGAAC AGCCAATCTA AAAAAGGTGT CACTTTTACC TTCTTATAAT
  ATAGAATTAG TAGCTACTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325561457	CHEV_18_26000656	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220477496					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:25975212 () rs orientation: forward

Symbol	Name	Function Class
Gm33228	predicted gene, 33228	within coordinates
Gm56495	predicted gene, 56495	within coordinates
Rr344994	regulatory region 344994	1012 bp distal
Rr350889	regulatory region 350889	1073 bp distal