rs220477701 SNP Detail

Summary

• ID
  rs220477701
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:114363886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTGTCAT GTAAAGGTTA
  TTGAAGACTA AGGTGTCTGG GATGCTCATG GATGCTCTTA TGTGTTTGCT TGGGTGTTAA
  TGTAGCAGCA GAGGGAATTG GGGGGGGGGG GTGGCTGAAG GCTAGGAGTC CTGTCGATCT
  GGGTGTCAGT GGCGGCTGTC ATGGGAAAAA TAAGGACCAC CACTGGGAGT CTGGTTAGCC
  W
  GGAGAGTCAC CGGGCATCAG CAGGCATCAG TGGATGTGGG TGCGGGTAGA AAAGGGTTAG
  GGGAGTCAGT GGGGGCACTT TAATGGTGGT CACCGGGGGG TAAGTACACG TGAGAGGGAT
  AAAGAAGGCG TCAGAGGAGT TAAGGAAGAG CCTCTGTAAA TAAGGAGGCC AGTAGTCATG
  CAGAGAGCAG GCGGGTGCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376089350	MGP_WTSI_8_116161154	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220477701					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376089350	MGP_WTSI_8_116161154	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:114363886 () rs orientation: forward

Symbol	Name	Function Class
4921521C08Rik	RIKEN cDNA 4921521C08 gene	1474 bp upstream
Cpgi21080	CpG island 21080	984 bp distal
Mon1b	MON1 homolog B, secretory traffciking associated	within coordinates
Rr368624	regulatory region 368624	1280 bp downstream
Rr401146	regulatory region 401146	1661 bp downstream
Tssr79522	transcription start site region 79522	1657 bp downstream
Tssr79523	transcription start site region 79523	1624 bp downstream
Tssr79524	transcription start site region 79524	1412 bp downstream
Tssr79525	transcription start site region 79525	1392 bp downstream
Tssr79526	transcription start site region 79526	1474 bp upstream