rs220477766 SNP Detail

Summary

• ID
  rs220477766
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:100854306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGTGAGG AGTCCACAGG
  CAGTTGAGGA GGAAATGGGG AGGCAGCAGT GAGGTCCGCC CCCTGCAGCC CTGAGAGTTC
  TCTGCGAGAG AACCTAGCAA GAGTCCTCTG ATTCAGCCCT TCCGGCTAGG CTCTTACCCT
  CAGTCCTCCG CCAGCTGTAC TCCTACAGCT CAACTTGGCA GTGTCTGGAC AACGCTGCAC
  R
  CGGACGAGCT CTCCCTCTCT CAATCCTGCA AGGAAAAAAA AAAAAAATCA TCCCAGCTCA
  TCTAGAAAAT CCCCAGCTGG AAGCTCTCCA TTCCCCAGCT GAGGCAGAAT CATGTGAACT
  CCAATCTGGT GTCAGGCTGG GCGGTTGCTG AGGAACCCGC CAGCGGGAGG ATGCGGGTGG
  GCAGGCAGGC AGCAGAGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387108234	MGP_WTSI_12_102126257	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220477766					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387108234	MGP_WTSI_12_102126257	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:100854306 () rs orientation: forward

Symbol	Name	Function Class
Gm36572	predicted gene, 36572	24 bp upstream
Gpr68	G protein-coupled receptor 68	within coordinates
Rr471362	regulatory region 471362	within coordinates
Rr471363	regulatory region 471363	127 bp distal
Tssr117330	transcription start site region 117330	183 bp upstream
Tssr117331	transcription start site region 117331	160 bp upstream
Tssr117332	transcription start site region 117332	146 bp upstream
Tssr117333	transcription start site region 117333	111 bp upstream
Tssr117334	transcription start site region 117334	89 bp upstream
Tssr117335	transcription start site region 117335	10 bp upstream
Tssr117336	transcription start site region 117336	26 bp downstream