rs220481025 SNP Detail

Summary

• ID
  rs220481025
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116387606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGATCAG ATGTTCAAGA
  CCAATATGAG CAATTCAGCA AGATCCCCAT CTCAAAAACA GAAAGTTGTC TTTCAAGGGA
  AATAGTACTC TAACTTTCAA AGCGTAATCA CAGAACACAC ACACACACAC ACACACACAC
  ACACACACAT TTTTAAAATC TATTGTTTGA GTTTAGAAAC AGTGTATAGC AGGTTAGTAA
  R
  ATGTTTTCTT TTTTGGTGTA GAGGGTAATG AGGCTTCCTG TGACTTTAGA CTTAACTCTC
  CAGGAAAACA CCTTATGAAC TTGTAATTAT TATTCTGGGA CGGAGAAGGA AAAATAAACG
  TAAAATAACA AACTTCAAAG TTGAAAGCAA AGTTTTTTGT TTTGTTTTGT TTTGTTTTTT
  TCTTTTTTTT GTCTCTCAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320895800	CHEV_3_116296875	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220481025					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116387606 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13737	CpG island 13737	519 bp proximal
Rr397965	regulatory region 397965	806 bp upstream
Rr583746	regulatory region 583746	493 bp proximal
Rr583747	regulatory region 583747	790 bp proximal
Rr583748	regulatory region 583748	871 bp proximal
Rr583749	regulatory region 583749	1064 bp proximal
Rr583750	regulatory region 583750	1232 bp proximal
Sass6	SAS-6 centriolar assembly protein	1025 bp upstream
Trmt13	tRNA methyltransferase 13	within coordinates
Tssr31360	transcription start site region 31360	1002 bp upstream
Tssr35316	transcription start site region 35316	859 bp downstream
Tssr35317	transcription start site region 35317	891 bp downstream