rs220484842 SNP Detail

Summary

• ID
  rs220484842
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74410385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGGAAGAA AATGTTTCTG
  ATTTTCAAAG TGCAATAGAT ATAATAATAT GCTATGTTTA CACTGACAAC ACCAGCAGAG
  AAGAAGGCAT AGACATAGTA TCTACTTTGT AAGATAATCC CCTAAATTCT AAGATCTTCA
  GTTACAGCTT TGTAAACTTA AAAGAATAGG AGAGAGCTAA ACTTTAGTGT GCCATGTATC
  S
  CCTCACCAAT GTGGAAGAAA GTAAACAGAC ATTTCACCAG TTTTTATTTG GAAAATTAGC
  CATTTTATTT CCCAGCCTTG GTAGTTTCTA AGAACATAAA ACTCGTGCTG CCTCTTGTCT
  CAGATCTTTC CTAAAGGGAA CAGGAAAGTT TTGTTTGTTT TTGTTGTTGT TGTTGTGTTT
  TGTTTTGTTT TTGACTCTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354483045	MGP_WTSI_2_74418098	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220484842					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354483045	MGP_WTSI_2_74418098	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74410385 () rs orientation: forward

Symbol	Name	Function Class
4930445N08Rik	RIKEN cDNA 4930445N08 gene	within coordinates
Cpgi11782	CpG island 11782	752 bp distal
Lnpk	lunapark, ER junction formation factor	606 bp upstream
Rr559317	regulatory region 559317	1829 bp distal
Rr559318	regulatory region 559318	1690 bp distal
Rr559319	regulatory region 559319	1104 bp distal
Rr559320	regulatory region 559320	987 bp distal
Rr559321	regulatory region 559321	352 bp distal
Tssr18388	transcription start site region 18388	993 bp downstream
Tssr24610	transcription start site region 24610	1087 bp upstream
Tssr24611	transcription start site region 24611	624 bp upstream
Tssr24612	transcription start site region 24612	591 bp upstream
Tssr24613	transcription start site region 24613	577 bp upstream