rs220488639 SNP Detail

Summary

• ID
  rs220488639
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:28450090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGGTCCC CCCCAAAGGC
  TGCAATGTTC CTCTTCACCC AGGCGATAGC CATGTGCTGA TCTCGAAGAC CAAAGTTACC
  TGAGGGTGAG GGGAGAGCCT TCATCAGGAG GGCCCCCAAC TAAAGCTGGA GGAGGTTAGA
  GATTGGTGAC CTAGAGATTA ACAGTCAATG TGCCCATTCC CAGGAGGGCA AATGGTAGAT
  Y
  TTCAGGAGGC TGAGTTTAAA GGGGAGTAGC GGTGGGATGG GGGTGGGGAG TGGGTCAGGA
  AGGTGGGAGG CGTGGGAGGC ACAGCCACCA GTGGCTCGGC CTGACTCCAT TCTGCACATT
  TCCTCCTACT GTCTGTCTTC CCTTTGGCAT CTTTCCTATG GTATCTTTTC AGGGCTCAAC
  TTGAATCTCT GCCATTCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353478957	MGP_WTSI_2_28415598	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220488639					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353478957	MGP_WTSI_2_28415598	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28450090 () rs orientation: forward

Symbol	Name	Function Class
Cel	carboxyl ester lipase	within coordinates
Rr553836	regulatory region 553836	688 bp proximal
Tssr16963	transcription start site region 16963	476 bp upstream
Tssr16964	transcription start site region 16964	870 bp upstream
Tssr23260	transcription start site region 23260	1996 bp upstream
Tssr23261	transcription start site region 23261	1955 bp upstream
Tssr23262	transcription start site region 23262	683 bp upstream
Tssr23263	transcription start site region 23263	641 bp upstream
Tssr23264	transcription start site region 23264	439 bp upstream
Tssr23265	transcription start site region 23265	397 bp upstream
Tssr23266	transcription start site region 23266	216 bp upstream
Tssr23267	transcription start site region 23267	186 bp upstream
Tssr23268	transcription start site region 23268	443 bp downstream
Tssr23269	transcription start site region 23269	509 bp downstream
Tssr23270	transcription start site region 23270	580 bp downstream
Tssr23271	transcription start site region 23271	1102 bp downstream
Tssr23272	transcription start site region 23272	1126 bp downstream
Tssr23273	transcription start site region 23273	1156 bp downstream
Tssr23274	transcription start site region 23274	1186 bp downstream
Tssr23275	transcription start site region 23275	1250 bp downstream