rs220491606 SNP Detail

Summary

• ID
  rs220491606
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:45224302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGAAGAT AATTCAATTT
  ACTGAACCGA CCTGATGGTC TGAGTAGGTA GAGATGGCAA ACTAAGCATC CAGTGAGACT
  GCTGAAACAT GGAACACAGT AGGACTGCTA GCTCTCTCTG TGCAACTACT GGAAACAAAC
  ACACAAACAA ACAAAAATGC TAATTTGAAT ATGTTGCAAA TGAAATCACG AAGCCCAGAA
  R
  AGTAATTACT AAGATATGAA CTCCTAAGAA TTATACAACT AGCTCTGGTC TTTTTCTTGT
  GACATATTCA CCTTTAAGTA GGGATCACTC ACGGAGCCCC AAAGCCACCT GTCCTGTAGA
  CAAACTTCCC TGCACCAGGG AATTCCTTGC TTAAACCCAT GTCTGGGGCT TCATAGTGGC
  TTCTTCCCCC AGGATCCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324582444	CHEV_14_45606520	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220491606					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:45224302 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6357	CpG island 6357	1880 bp proximal
Gm17173	predicted gene 17173	within coordinates
Gm49364	predicted gene, 49364	within coordinates
Gm63525	predicted gene, 63525	782 bp downstream
Ptger2	prostaglandin E receptor 2 (subtype EP2)	1350 bp upstream
Rr491040	regulatory region 491040	948 bp proximal
Tssr4380	transcription start site region 4380	1923 bp downstream
Tssr125199	transcription start site region 125199	1319 bp upstream
Tssr125200	transcription start site region 125200	1347 bp upstream
Tssr125201	transcription start site region 125201	1611 bp upstream
Tssr125202	transcription start site region 125202	1731 bp upstream
Tssr125203	transcription start site region 125203	1808 bp upstream