rs220496258 SNP Detail

Summary

• ID
  rs220496258
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84466483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGGTTGG CCTCCAACTC
  CCAGGATCAT GGAAGCCTCC TGCCTCCGCC TCTCTAATAC TGGGATTCAA AACCTGAGAA
  TCCAACTAGC GAGGCTGCTT GGTTGGTTTT GAAGACAAGG TATCATGTGG TCTCAAACTC
  AGTATACAGC AGAGAATGAC CTTGAACTTT TGACCCTCCT GCCTCTACTC GCTAGGTACT
  M
  TGATAGCAGA CACAGACACC ACACCCACAT GTTCAGTTAA TTCAAACTGT AAACCAGAAA
  GTTTGTACAC AAACTCTTGG CCCTTGAAAC AATATGGTAA AATACAGCTG GTCTTGTTCC
  ATTTTACAGA GGAGGAAAGT GCAGCCCAAA GTCACTGTGA CCCAGCTTAG TGACAGCCAG
  GCAGGCCCCT GCAGCTGTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375384451	MGP_WTSI_8_86263753	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220496258					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375384451	MGP_WTSI_8_86263753	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84466483 () rs orientation: forward

Symbol	Name	Function Class
Adgre5	adhesion G protein-coupled receptor E5	within coordinates
Cpgi20655	CpG island 20655	1024 bp proximal
Gm46046	predicted gene, 46046	1432 bp upstream
Rr368559	regulatory region 368559	83 bp upstream
Rr666301	regulatory region 666301	1305 bp proximal
Rr666302	regulatory region 666302	1462 bp proximal
Rr666303	regulatory region 666303	1516 bp proximal
Tssr2618	transcription start site region 2618	252 bp downstream
Tssr2619	transcription start site region 2619	536 bp upstream
Tssr2620	transcription start site region 2620	1422 bp upstream
Tssr78289	transcription start site region 78289	1433 bp downstream
Tssr78290	transcription start site region 78290	1405 bp downstream
Tssr78291	transcription start site region 78291	483 bp upstream
Tssr78292	transcription start site region 78292	509 bp upstream
Tssr78293	transcription start site region 78293	627 bp upstream
Tssr78294	transcription start site region 78294	710 bp upstream
Tssr78295	transcription start site region 78295	761 bp upstream
Tssr78296	transcription start site region 78296	781 bp upstream
Tssr78297	transcription start site region 78297	1534 bp upstream
Tssr82049	transcription start site region 82049	207 bp downstream
Tssr82050	transcription start site region 82050	292 bp downstream
Tssr82051	transcription start site region 82051	573 bp downstream
Tssr82052	transcription start site region 82052	1319 bp downstream