rs220502734 SNP Detail

Summary

• ID
  rs220502734
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85432834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTATAAT AGTTTGTGGG
  TTTTTAAAAA CGTACTTTAT AATGTAATAA GCACCAGGGT TTTTATGTTT AATTATCTTA
  AAAATAATTT TCTCTCGTCC TTTTCCTTTT GATCTTGTGT TGGTTTTTTT TTTTTAATGT
  CGAGGTGTTT TTAAACGTTT TCTTCAGCCC TCCCACCGAA ACCGAACGAC GAAACAAATT
  W
  AAACCCCAGA TTATCCTCGT CAACGCAGGA AAAAAGGCAA AACAAAAAAA AAAAAACAAA
  AAAAAAACCA ACCAACCAAA CCAACAAACA AAAACCCAGA AAACTATCAA AAAGGAAAAC
  AAACAAAAAA AAAAACAAAA AAAAGGAAAA CACTCAGCTT TCATCCCCGC TAAGGGCAGG
  GCAGGCCCAG TTCTTTTAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375404560	MGP_WTSI_8_87230104	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220502734					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375404560	MGP_WTSI_8_87230104	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85432834 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20708	CpG island 20708	1613 bp distal
Cpgi20709	CpG island 20709	255 bp distal
Cpgi20710	CpG island 20710	372 bp proximal
Lyl1	lymphoblastomic leukemia 1	1265 bp downstream
Nfix	nuclear factor I/X	within coordinates
Rr187001	regulatory region 187001	within coordinates
Rr368567	regulatory region 368567	1579 bp downstream
Tssr82117	transcription start site region 82117	1067 bp upstream
Tssr82118	transcription start site region 82118	1030 bp upstream
Tssr82119	transcription start site region 82119	1003 bp upstream
Tssr82120	transcription start site region 82120	927 bp upstream
Tssr82121	transcription start site region 82121	378 bp upstream
Tssr82122	transcription start site region 82122	145 bp upstream
Tssr82123	transcription start site region 82123	within coordinates
Tssr82124	transcription start site region 82124	22 bp downstream
Tssr82125	transcription start site region 82125	106 bp downstream
Tssr82126	transcription start site region 82126	295 bp downstream