rs220509215 SNP Detail

Summary

• ID
  rs220509215
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:184543123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCCTTTCC CAGCCTCCGG
  TCTCTAGTCT GAGTAAGAAG GGACCGGCGA GCGGACCCCG CTGACCTCCC CACACCCACA
  CAGCCTAGGT CAGCGTGGTG ATGCTCGGTG CTCAGCGTAC CTGTCGCGCA GGTGGCCATA
  GCGCAGCCCC ATGGCAGTGC ACTCTGCCTC GCTCACCGAC AACCCCTTGC AGGACTTGAT
  Y
  GGGTAGATCC AGAGCTGTGC CACCGTTCCC ACTTGCTGTA GCCGCCGGCG TCGCCGGGGA
  CGCGCACGAC GCCAGGCCAC TGTCCCCAGG GCCACCGCGG CCAGTCCCAG CGCGGCGACG
  CCGAGCCAGG TGGACCGCGG CTGGCCCGGG ACCCGAAACG CGGAGAAGCC GAAGAGGGTC
  AGCGCCCAGG ACCCCGCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320169573	CHEV_1_186634805	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220509215					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184543123 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1161	CpG island 1161	within coordinates
Gm70890	predicted gene, 70890	998 bp upstream
Mtarc1	mitochondrial amidoxime reducing component 1	Coding-Synonymous
Rr425290	regulatory region 425290	261 bp proximal
Rr425291	regulatory region 425291	1009 bp proximal
Rr425292	regulatory region 425292	1422 bp proximal
Rr425293	regulatory region 425293	1570 bp proximal
Tssr15650	transcription start site region 15650	54 bp downstream
Tssr15651	transcription start site region 15651	230 bp downstream
Tssr15652	transcription start site region 15652	244 bp downstream
Tssr15653	transcription start site region 15653	333 bp downstream
Tssr15654	transcription start site region 15654	360 bp downstream
Tssr15655	transcription start site region 15655	378 bp downstream