rs220511541 SNP Detail

Summary

• ID
  rs220511541
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141267032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGCCCGCG TCCAACAAGG
  TGTGTTAATA TATCACTAGG CTACATTCCC AGTTCTTGGT AGTGTTTTCT TTGTTTGGCT
  TAATTTGAAA GGGTCTTCCA GAGCCACTGT TTATATTTTT GAGAAAGGGT CTTATATAGC
  TCAGGCTAGT CTCACACTTC TAGTTTTGTG CCCACCTCTC AGGACTGAGA CTGTAGACCT
  T
  GGCTACCATA TAACTTCACC AACCGAACAG GCAGTATTTT GAATTGGAAA AAAATCATAA
  ATAATAGCAA TAATATTTGG GGTCACATAA TTGTTTCTTT TGTTCCATAA AAAGTACTAG
  GGTTTATTTT TTATTATTTG TTCATTTTAG TCTGCCATAT AGCCTAAGTT TATATGTATA
  TAATATATCT TGATATATAT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321387950	CHEV_4_141095636	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220511541					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141267032 () rs orientation: forward

Symbol	Name	Function Class
B830004H01Rik	RIKEN cDNA B830004H01 gene	within coordinates
Cpgi15234	CpG island 15234	636 bp distal
Gm68462	predicted gene, 68462	within coordinates
Rr1207	regulatory region 1207	1862 bp distal
Rr603789	regulatory region 603789	634 bp distal
Spen	spen family transcription repressor	1124 bp upstream
Tssr44321	transcription start site region 44321	1196 bp upstream
Tssr44322	transcription start site region 44322	1095 bp upstream