rs220513008 SNP Detail

Summary

• ID
  rs220513008
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84628240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACGAGCTTT CTCTCCTCTT CCAGGTGTTC CTGAAATAGA
  GCTGTGTGGC TCAGTTGTCA TCGTCCCGTT TGAGGGTCCT GGGATGAAAG TCCAGTTCGT
  K
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGGTGGGA
  GGGTAGTGTG TACTTATGCA GTGGCCAGAA AATGTCCTC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322746693	CHEV_8_86425510	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220513008					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84628240 () rs orientation: forward

Symbol	Name	Function Class
Adgrl1	adhesion G protein-coupled receptor L1	within coordinates
Cpgi20662	CpG island 20662	within coordinates
Gm26721	predicted gene, 26721	1884 bp upstream
Rr178090	regulatory region 178090	1361 bp proximal
Rr186961	regulatory region 186961	within coordinates
Tssr78300	transcription start site region 78300	1642 bp downstream
Tssr78301	transcription start site region 78301	1518 bp downstream
Tssr78302	transcription start site region 78302	1501 bp downstream
Tssr78303	transcription start site region 78303	1446 bp downstream
Tssr78304	transcription start site region 78304	1123 bp downstream
Tssr78305	transcription start site region 78305	994 bp downstream
Tssr78306	transcription start site region 78306	966 bp downstream
Tssr78307	transcription start site region 78307	894 bp downstream