rs220519214 SNP Detail

Summary

• ID
  rs220519214
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56429750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACTGTCCA ACAACAAAAC
  CCACAACAGC AAAATGCATT TCAAGGCTAT GAATTTGCCT TTGAGGACAC CTTTGGCTGT
  ATCTATGTGT GATGTGCACA CACACTTGCA CAGGCTACAG GTTGATTCTG GGTGTCTTCC
  TCAATGGTTC TCCACATTGT CTACTGAGGC AGGACCTCTC ATTAACTGGG CTAGGCTGAC
  Y
  TGCAAGAGGT CAGGGACCTT CCTGTGTCTG CTTCCCAAGT GCTAAAATTA CAGGCATGTA
  CCATTACACC TGGCCTTTTC TGTGAGTACT AAGGGATTCA AACTCAGGTC TTCTTGCTTG
  CACAGGAAGT GTTTCCCCTG CAATCAGCTA GTTCCTCCTT GTTGTCATCT CATCTTAAAG
  TTTTCCAGGT TGTCACCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398551846	MGP_WTSI_17_56262173	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220519214					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398551846	MGP_WTSI_17_56262173	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56429750 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9340	CpG island 9340	1823 bp distal
Cpgi9341	CpG island 9341	681 bp proximal
Gm56918	predicted gene, 56918	1673 bp downstream
Lrg1	leucine-rich alpha-2-glycoprotein 1	804 bp upstream
Rr340022	regulatory region 340022	749 bp distal
Rr340023	regulatory region 340023	1050 bp proximal
Sema6b	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	335 bp downstream
Tssr5175	transcription start site region 5175	808 bp upstream
Tssr148755	transcription start site region 148755	1932 bp upstream
Tssr148756	transcription start site region 148756	1902 bp upstream
Tssr148757	transcription start site region 148757	1722 bp upstream
Tssr148758	transcription start site region 148758	1687 bp upstream
Tssr148759	transcription start site region 148759	830 bp upstream
Tssr148760	transcription start site region 148760	792 bp upstream
Tssr148761	transcription start site region 148761	764 bp upstream
Tssr148762	transcription start site region 148762	749 bp upstream