rs220519227 SNP Detail

Summary

• ID
  rs220519227
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149978247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGATGTAAT GTCTTAGCCT
  TAGTATGTTT TGCTAAATAG AACTGATGTT AGTTACAATT CATAAAAAAT TCAATAACAC
  CCCCTGCTTT ATATCTTAAC ACTTGAATTT AAAACCTTAG CCCAGCCTGG GGTACAAGCC
  TGACACTGTG CCTCAAAACA CAACAGTCGT ATTGATGTTG TGATCTTCTT TGAGACGGTG
  M
  TTCTAAGTGA TGGATGCTGT CATGTATTAT ACAGTCATCT GTTTGCTTGA ACAAATAGGT
  GAATGGATAG ATACTTACTT TAGAATTTAC ATGTTCCAGG AAATAAGGAG CTTCCTGATT
  CAAAAGAAGT GCTGGAAAAG GTTCTTCTAC GGAGAGAGTT CATCCCTGAC CCCCAAGGCT
  CAAATATGAT GTTTGCATTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351888733	MGP_WTSI_1_151949626	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220519227					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351888733	MGP_WTSI_1_151949626	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149978247 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Tssr242	transcription start site region 242	304 bp upstream
Tssr9223	transcription start site region 9223	1547 bp downstream
Tssr9224	transcription start site region 9224	1439 bp downstream
Tssr9225	transcription start site region 9225	1314 bp downstream
Tssr9226	transcription start site region 9226	1301 bp downstream
Tssr9227	transcription start site region 9227	1223 bp downstream
Tssr9228	transcription start site region 9228	1183 bp downstream
Tssr9229	transcription start site region 9229	1170 bp downstream
Tssr9230	transcription start site region 9230	383 bp downstream
Tssr9231	transcription start site region 9231	350 bp downstream
Tssr9232	transcription start site region 9232	307 bp downstream
Tssr9233	transcription start site region 9233	146 bp upstream
Tssr9234	transcription start site region 9234	150 bp upstream
Tssr9235	transcription start site region 9235	190 bp upstream
Tssr9236	transcription start site region 9236	227 bp upstream
Tssr9237	transcription start site region 9237	246 bp upstream
Tssr9238	transcription start site region 9238	275 bp upstream
Tssr9239	transcription start site region 9239	316 bp upstream
Tssr9240	transcription start site region 9240	338 bp upstream
Tssr9241	transcription start site region 9241	364 bp upstream
Tssr9242	transcription start site region 9242	384 bp upstream
Tssr9243	transcription start site region 9243	508 bp upstream
Tssr9244	transcription start site region 9244	553 bp upstream
Tssr9245	transcription start site region 9245	573 bp upstream
Tssr9246	transcription start site region 9246	610 bp upstream
Tssr9247	transcription start site region 9247	749 bp upstream
Tssr9248	transcription start site region 9248	1169 bp upstream
Tssr9249	transcription start site region 9249	1196 bp upstream
Tssr9250	transcription start site region 9250	1364 bp upstream
Tssr9251	transcription start site region 9251	1410 bp upstream
Tssr9252	transcription start site region 9252	1465 bp upstream
Tssr9253	transcription start site region 9253	1495 bp upstream
Tssr9254	transcription start site region 9254	1522 bp upstream
Tssr9255	transcription start site region 9255	1541 bp upstream
Tssr9256	transcription start site region 9256	1781 bp upstream
Tssr9257	transcription start site region 9257	1805 bp upstream
Tssr9258	transcription start site region 9258	1828 bp upstream
Tssr9259	transcription start site region 9259	1853 bp upstream
Tssr9260	transcription start site region 9260	1908 bp upstream
Tssr9261	transcription start site region 9261	1963 bp upstream
Tssr9262	transcription start site region 9262	1971 bp upstream
Tssr9263	transcription start site region 9263	1993 bp upstream
Tssr14130	transcription start site region 14130	1234 bp upstream
Tssr14131	transcription start site region 14131	1178 bp upstream