rs220521289 SNP Detail

Summary

• ID
  rs220521289
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:145813112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAAAACCCT CATTGTGAAA TATGGTCACT
  AGAAAGGGAT GCCTGACTAG GGCTTTGGGG GTGGAGTTAT AAATGTTAAA GCGCTCACGT
  ATAGGAGAGT TAGACCTATT TGTGAAGACA AGACAAGCTC CTAGATGGTT TTCCAGGGAC
  M
  TAAACCTTCT CTGTGTCATC ATGAAGATTC ACAGGACAGA CAAGAAGAGA AAAACCTCGA
  GTTTTGTCTG CCAGTGTGAG GAGACTTGGA CCGCAAGAAA CAACTCTGTC CGCTGAACAA
  TAACAGCAGC CAATGCCTTC GCACACTGTA                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320539187	CHEV_2_145796928	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220521289					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145813112 () rs orientation: forward

Symbol	Name	Function Class
Cfap61	cilia and flagella associated protein 61	Intron
Rr374013	regulatory region 374013	within coordinates
Rr566617	regulatory region 566617	71 bp distal
Rr566618	regulatory region 566618	99 bp proximal