rs220523556 SNP Detail

Summary

• ID
  rs220523556
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150883174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAA GTGTTGAGCT TACGTGTTCA
  Y
  GATGTTACTA ATTAGCTTCT TTGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321430191	CHEV_4_150172826	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220523556					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150883174 () rs orientation: forward

Symbol	Name	Function Class
Gm36806	predicted gene, 36806	within coordinates
Gm69570	predicted gene, 69570	within coordinates
Gm69574	predicted gene, 69574	within coordinates
Gm69578	predicted gene, 69578	414 bp downstream
Mir12196	microRNA 12196	765 bp upstream
Rr398884	regulatory region 398884	80 bp upstream
Rr398885	regulatory region 398885	865 bp upstream
Rr605416	regulatory region 605416	186 bp proximal
Rr605417	regulatory region 605417	727 bp proximal
Rr605418	regulatory region 605418	990 bp proximal
Tssr1385	transcription start site region 1385	760 bp upstream
Tssr1386	transcription start site region 1386	874 bp downstream