rs220530813 SNP Detail

Summary

• ID
  rs220530813
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:62315196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTTGGGG GGGAGGCAGG
  GTTTCTCTGT GGAGCCCCAG CTGTCCTGGA ATTCACTCTG TAGACCAGGC TGGCCTCGAA
  CTCAGAAATC CGACTGCCTC TGCCTCCCAA GTGCTGGGAT TAAAGGCGTG GGCCACCACT
  GGCCGGAACT TTGGGTAATT TACTTACTCA TTTAGAACAC ATTACCCATT TCCTCTAACA
  R
  AACAACAGTG AAGCACTTTG TGAAAAAAAA GTAGGTGCGG TGTTTACTTG AGAAATGGGG
  CTTAGAAATG GAACCTACAT GGGCCCTTCG GCCTCCTTCA ATGACACATT TTTTTTTATA
  GTGCCTCAAA AATATTTCCC CTAAACCCCA CAAATATCAA TTAAAGATCT CTTCTGTTCA
  CACAATTTTC AAAGCACACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325649297	CHEV_18_62341779	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220530813					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:62315196 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10125	CpG island 10125	1505 bp distal
Gm9949	predicted gene 9949	within coordinates
Rr393783	regulatory region 393783	within coordinates
Rr539066	regulatory region 539066	1920 bp distal
Rr539067	regulatory region 539067	1300 bp distal
Rr539068	regulatory region 539068	1582 bp proximal
Rr539069	regulatory region 539069	1742 bp proximal
Tssr151487	transcription start site region 151487	1943 bp downstream
Tssr151488	transcription start site region 151488	801 bp upstream