rs220538105 SNP Detail

Summary

• ID
  rs220538105
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:158724780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGCTCTCA ATGTTCCAGC
  AAGTCCCCTA ATGTACATTC TAGAGCAGGC TTTATGACAT TTGGCATTTA TGACACATTA
  CCCTTAGTAA AGGCACAGCA GAAGAGGAAA CCTGATACCA GTAGTTCTCA GCTGTCTACC
  CTCTAGTGAG GAGTATGTGA AAGTTGGATC TAAAAAACAA AAAGAAAGGA AGAAACAAAG
  R
  AAGAAACAAA GAAAGAAAGT TGGATCCAAT GTTTCCCTTC AGAAAGGGAG CTAGACCTCC
  ATCCATGAAT CTGTTTCGGC AGACCTGCTG GTATGTCAAT GTGTTGGAGG GTGGGTGAGG
  GGTTTCTCAC AGGGTTCCAC TCTTAGAATA AGAGCTACTG GCAATTGAGG GTTGCTGGGG
  GAAGGTAAAT CTGTCTTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss405009487	MGP_WTSI_X_156379716	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220538105					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss405009487	MGP_WTSI_X_156379716	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:158724780 () rs orientation: forward

Symbol	Name	Function Class
Rr694730	regulatory region 694730	741 bp proximal
Sh3kbp1	SH3-domain kinase binding protein 1	within coordinates
Tssr162525	transcription start site region 162525	1337 bp downstream
Tssr162526	transcription start site region 162526	72 bp downstream
Tssr162527	transcription start site region 162527	899 bp upstream
Tssr162528	transcription start site region 162528	1060 bp upstream
Tssr162529	transcription start site region 162529	1105 bp upstream
Tssr162530	transcription start site region 162530	1121 bp upstream
Tssr162531	transcription start site region 162531	1138 bp upstream
Tssr162532	transcription start site region 162532	1164 bp upstream
Tssr162533	transcription start site region 162533	1196 bp upstream
Tssr162534	transcription start site region 162534	1216 bp upstream
Tssr162535	transcription start site region 162535	1262 bp upstream
Tssr162536	transcription start site region 162536	1307 bp upstream