rs220539290 SNP Detail

Summary

• ID
  rs220539290
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31996841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCCTATG CCCCAACTTC
  TCGGTCCCCT CTCCTTCCCA AGTTCCTCTA AGACTCTTCT ATCAGTCTTT CTCGTTGCTT
  TCTTGAGGAG TTCACAGATG CCTCTCCTAC ACTTGCCCCA AGTGTATAGT GATCATTCCC
  ACACTACTCA AGCTATCTCC ACTAGCATAA GATGCTCTCT GATTCGTCCA GAATCTGGAC
  R
  TCTGACAACT GCAATCGCTG GATGGCTACA ATCGCCCAGA TCCTAGCGGA GAACTCTCAA
  AACAAGATGC CTAGTTTGAG GAGAAGCTGA ATGGTCCCCA GCCTCAGCTT CTTCCTAGAG
  CCTTTGGGGG AAACTCTTTC AGAGGGGTTG CCTAAGACTG TTGGAAAACA CAAGATTTTT
  GCATTACAAT TCACAACAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395853919	MGP_WTSI_16_32178109	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220539290					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395853919	MGP_WTSI_16_32178109	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31996841 () rs orientation: forward

Symbol	Name	Function Class
Bex6	brain expressed family member 6	1777 bp upstream
Rr370081	regulatory region 370081	709 bp downstream
Rr370082	regulatory region 370082	517 bp downstream
Tssr137949	transcription start site region 137949	434 bp downstream
Tssr137950	transcription start site region 137950	348 bp downstream
Tssr137951	transcription start site region 137951	1753 bp upstream
Tssr137952	transcription start site region 137952	1771 bp upstream
Tssr137953	transcription start site region 137953	1815 bp upstream
Tssr137954	transcription start site region 137954	1831 bp upstream
Tssr140794	transcription start site region 140794	1069 bp upstream
Tssr140795	transcription start site region 140795	1556 bp downstream
Tssr140796	transcription start site region 140796	1573 bp downstream
Tssr140797	transcription start site region 140797	1591 bp downstream
Tssr140798	transcription start site region 140798	1652 bp downstream