rs220541509 SNP Detail

Summary

• ID
  rs220541509
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:41496744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTAG TTCAGGCTGA GCCCATCTCT
  Y
  CTATGGACTG CTTCCTTGTC AGCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321092837	CHEV_4_41443777	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220541509					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:41496744 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14157	CpG island 14157	645 bp proximal
Myorg	myogenesis regulating glycosidase (putative)	within coordinates
Tssr41339	transcription start site region 41339	411 bp upstream
Tssr41340	transcription start site region 41340	1477 bp downstream