rs220544375 SNP Detail

Summary

• ID
  rs220544375
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53377799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCTAAATGA CCCTAGAAGG AACTGAGGCT
  AAGTGACCAT TCTGATGTCA TAAAATTTAG TCTTTTTCCT TTTTTGATTG GGACAGCCCC
  ATTCCAAATT TTGTGTGCTG GCATAATACT GGTATGGAAA TGTTGTATAT TAAAAGCAAA
  M
  TAGAAAGAAC ATAATAGTAC CCATGAAGAA AACTATCCCT GGTGGTTGTA CCTACAAACT
  ACCTTCTTCA GAATATTGCC CTCTGTGCTT GGCTGTGCTA CCTTACACAT TATATACTTG
  CAAATATTTT TGTATTTAAT GCTGACAGAG                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324042714	CHEV_12_54432003	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220544375					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53377799 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr267616	regulatory region 267616	400 bp distal
Rr267617	regulatory region 267617	203 bp proximal