rs220546966 SNP Detail

Summary

• ID
  rs220546966
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62721384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGGTCTA CAAAGTGAGT
  TCCAGGACTA TACAGAGAAA CCGTGTCTCG AAAAAAAAAA AACAAAAAAG GAAGACAGAA
  AAGAAAAGAA AGGAGAAGAG AAGAGAAAAA AGAGAAAAGA AAAGAAACCA ATACCTGAGG
  GGAAGGGCTG CTTTATGGCG CCCCCTCGTC CAATCATCCG GCGTGAGCGC ACAACTCCAC
  M
  CCAAACCAAT CCTGTCGTGG TAGTCCCAAG GTCTGGAAAG TCATTGCAAA TTCCTCAGTA
  GCCGCTCAGC TCAGGATGGT TGGTTCACTT GGAAAGAGTT GTGGGGGTGG GGAAGACAGG
  GAATCCTTTT TGTTTGTTTG TTTTTTTTGG GTTTTGTTTT GTTTTTTCGA GACAGGGTTT
  CTCTGTGTAG CCCTAGCTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323332076	CHEV_10_62348353	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220546966					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62721384 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1638	CpG island 1638	483 bp proximal
Gm51805	predicted gene, 51805	within coordinates
Rr384811	regulatory region 384811	within coordinates
Tet1	tet methylcytosine dioxygenase 1	within coordinates
Tssr93732	transcription start site region 93732	41 bp upstream
Tssr97890	transcription start site region 97890	1807 bp downstream
Tssr97891	transcription start site region 97891	1856 bp downstream