rs220551370 SNP Detail

Summary

• ID
  rs220551370
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40691460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTATAGTA AGAGACCACG
  TCGTTTATAA AAATGTCAAC TACTTTCTGT TGGTTGACAA CACTTTCAGA ACAGAAGCCG
  TCGCATCGCA TCCTTGTACC AGCCTCTGTG CACATTAGGT CCAGCCTGGT CCACTCACTG
  TCATCTGCGG TTTGCACCGT CAGAAACATC CTGACTTGTA TCCTTGCTTC CTTTTCTCCC
  Y
  GTGAAACACT CCATTTCCCC CAGGAACAGC CACAGTGTGC TTTCTTCAAT GTAACATGAC
  CCATGCAACT CTTCTGTTGC CTCTATGGTG AAATGCTTGC CTGGCCTATT AGGATCCATG
  GGAGTGATCC CTTCCTGTCT CTGTGACTTC ATCTCCCCGT GCTTTCCCTT GTTCATTGTG
  CTCCAGACAC ACTTATTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322919545	CHEV_9_40588247	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220551370					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40691460 () rs orientation: forward

Symbol	Name	Function Class
Clmp	CXADR-like membrane protein	within coordinates
Gm16096	predicted gene 16096	363 bp downstream
Rr676919	regulatory region 676919	1879 bp distal
Tssr84467	transcription start site region 84467	170 bp upstream
Tssr84468	transcription start site region 84468	912 bp upstream
Tssr84469	transcription start site region 84469	964 bp upstream