rs220554119 SNP Detail

Summary

• ID
  rs220554119
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:13869763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTATTGGT TTGGGGACTC
  TTGGAATTAC TAGGGCAAAG AGGGTACACC TTTTTAGCTG GTGTACAAAT CAAAACACTT
  CCTTTCCTAT TTGTGGATTT TCTATCAGAA TCCTCGTCTA TCTCAAAGAT GCCCATTTCT
  TGCCCATGGT GATCCTTTAA GGTAACATAA CCAGTCCCTT TTCACTCAGA TTATAAATAA
  Y
  TAGCTCATAG ATACAAGCAG ACCAAAACAA TAGGTGAACT GATGGCATAA TGGCTATGTA
  TTTGATACAA TACATCTCAC AAGGAGAAGA TACTCAATGT AAAGTTATCT TTTAACAAAT
  ATTTTCTCTA TTTTAGTATT AGATATGTTT AGTACATTTT TATTAAACTT TTTCTCAGAG
  ATAAAAGTTT TTGGCTAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367440977	MGP_WTSI_6_13819764	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220554119					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367440977	MGP_WTSI_6_13819764	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13869763 () rs orientation: forward

Symbol	Name	Function Class
1110019D14Rik	RIKEN cDNA 1110019D14 gene	1805 bp upstream
Rr378964	regulatory region 378964	532 bp upstream
Rr626597	regulatory region 626597	1691 bp proximal
Rr626598	regulatory region 626598	1814 bp proximal
Smim30	small integral membrane protein 30	within coordinates
Tssr54958	transcription start site region 54958	1753 bp upstream
Tssr59853	transcription start site region 59853	1309 bp downstream
Tssr59854	transcription start site region 59854	1403 bp downstream
Tssr59855	transcription start site region 59855	1695 bp downstream
Tssr59856	transcription start site region 59856	1713 bp downstream
Tssr59857	transcription start site region 59857	1923 bp downstream