rs220561186 SNP Detail

Summary

• ID
  rs220561186
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:113171242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGTCCTA GGCCTGGTCA
  GCTGTCTCAC TGGCTTTCCT TGGCTCTTTC CCTCTCTCAC AAACTTCCTG CTTATGAAGT
  AGCTCCCAAG ATCCAGCAAG AGAACTTGGC CAGTTCCCCA ATTCCCCAAG TGGACAGTGC
  GGATAATTTA TTAATTGGAA ATGTCAACGC ATTTCTCGGC AGCCTAGACA CCCCCCCCCC
  Y
  TTTTTTGAGT TTGAGTTTGA AGACAGAGGA GTTAACATGC TCATTGAGAG ACATGTTTAC
  GTTCAGGAAT TTTCACAAGC GATTATCACT AAGCAGTAAA CAGAAGGGTG AGAATTACTG
  CACGCGTCCA AATTTGATAA TCAGGGTGGG GTTGAAGAAA AGGAGAGGGG AACGGAAAAA
  AAGGATTAGA GTCAGTTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss390015770	MGP_WTSI_13_113824916	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	T	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs220561186					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390015770	MGP_WTSI_13_113824916	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:113171242 () rs orientation: forward

Symbol	Name	Function Class
Cdc20b	cell division cycle 20B	403 bp upstream
Cpgi6107	CpG island 6107	188 bp proximal
Gm61413	predicted gene, 61413	1606 bp downstream
Mir449c	microRNA 449c	1275 bp upstream
Mirc34	microRNA cluster 34, including Mir449a through Mir449c	1275 bp proximal
Rr486470	regulatory region 486470	1968 bp distal
Rr486471	regulatory region 486471	181 bp proximal
Rr486472	regulatory region 486472	1396 bp proximal
Tssr121164	transcription start site region 121164	1654 bp downstream
Tssr121165	transcription start site region 121165	519 bp upstream