rs220562518 SNP Detail

Summary

• ID
  rs220562518
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51116845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACCCGGCT TTTTTTTTTT
  TTTTCCATGA TGTCTTTTCA ACCCTCCTAA TTAAATAAAG TTTATCTCGT GTGCCAACCT
  CTGTCTAAAG TACCTGACTC TAGCTCTCCT GGATTCTCCC AAGGGAAACC ATGCTGTAAT
  TGACTTGGTC CGGGTGCCTG ACCTAACTGC TCACACTAGC CAGGCATGGT AGGTGGCGGG
  S
  GGGGGGGGGG GGGGGGCGAT CTCTGAGAGT TTAAAGCCAG CCTGGTCTAC ATAGTGAGTT
  CCAAGACATC CAGGGCTACA TTGTGAGACT CTGTCTTTTA AAAACATAAT AATAATAATA
  ATAATAATAA TAATAATAAC AACAACAACA ACAACAACAA ACTACTTACA AGAAAATTTG
  CTATTTGCAA ATAGCAGGTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	DBA/2J	FVB/NJ	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J
ss357925061	MGP_WTSI_3_51013346	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	DBA/2J	FVB/NJ	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J
rs220562518					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357925061	MGP_WTSI_3_51013346	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51116845 () rs orientation: forward

Symbol	Name	Function Class
Rr576241	regulatory region 576241	245 bp proximal
Tssr29031	transcription start site region 29031	863 bp upstream
Tssr29032	transcription start site region 29032	888 bp upstream
Tssr29033	transcription start site region 29033	928 bp upstream
Tssr29034	transcription start site region 29034	943 bp upstream
Tssr33189	transcription start site region 33189	756 bp downstream