rs220562844 SNP Detail

Summary

• ID
  rs220562844
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:145813196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGATGCCT GACTAGGGCT
  TTGGGGGTGG AGTTATAAAT GTTAAAGCGC TCACGTATAG GAGAGTTAGA CCTATTTGTG
  AAGACAAGAC AAGCTCCTAG ATGGTTTTCC AGGGACCTAA ACCTTCTCTG TGTCATCATG
  AAGATTCACA GGACAGACAA GAAGAGAAAA ACCTCGAGTT TTGTCTGCCA GTGTGAGGAG
  R
  CTTGGACCGC AAGAAACAAC TCTGTCCGCT GAACAATAAC AGCAGCCAAT GCCTTCGCAC
  ACTGTAAAGG GACATGCACA CCAACATGCC CATGGCCATC CCGCAAACTG ATATTTCAGA
  ACGGTCTATC TCAAGGCAGT CATTTGAAGA AAAACCAAAG AACAGAAGAG ACATGTCCGC
  CATCCGTTCT TGCTCTGCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	KK/HlJ	LP/J	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	SPRET/EiJ
ss356017039	MGP_WTSI_2_145797012	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	KK/HlJ	LP/J	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	SPRET/EiJ
rs220562844					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356017039	MGP_WTSI_2_145797012	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145813196 () rs orientation: forward

Symbol	Name	Function Class
Cfap61	cilia and flagella associated protein 61	Intron
Rr374013	regulatory region 374013	within coordinates
Rr566617	regulatory region 566617	155 bp distal
Rr566618	regulatory region 566618	15 bp proximal