rs220563105 SNP Detail

Summary

• ID
  rs220563105
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:86829241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACCTAGTT GGCCAAAACA
  TGAGAACGGA TGGAGATAGA GGGGCAAAAA AAAAAAAAGT TCCATGGGCA TCCAAGATGA
  CTCAGTAGGT CAGGTGACTC ATAGAACTGC CAATCATCGC CAGATCCCAC GTGGTGGAAG
  GGAAGCATAG ACTCCTGTAG TTTATCCTCT GACCCCTGCA TGCATGCCAT GCCAAGACAA
  S
  ACAGTAAATA AATCTAAAAA CTTTTGTGAG GAAAAAAATT GTTCCTGAAT TCTATTTCTA
  ATGCAAATGA ACTGGGAGAA GGCAGGCTTC AAGGAGGCAA CTACTAATTA ATCTGGGTTG
  CTTTATGGTT TAAAGTTTAT AGAACCGTAA CACGTTTTCC TCTTTCGTGC AAGTGCAGAA
  TGTCTACAGT GAGATGTTTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358764721	MGP_WTSI_3_86725856	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220563105					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358764721	MGP_WTSI_3_86725856	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86829241 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13328	CpG island 13328	825 bp distal
Cpgi13329	CpG island 13329	332 bp distal
Dclk2	doublecortin-like kinase 2	1082 bp upstream
Rr77821	regulatory region 77821	440 bp distal
Tssr33913	transcription start site region 33913	1586 bp upstream
Tssr33914	transcription start site region 33914	1544 bp upstream
Tssr33915	transcription start site region 33915	1521 bp upstream
Tssr33916	transcription start site region 33916	1399 bp upstream
Tssr33917	transcription start site region 33917	1369 bp upstream
Tssr33918	transcription start site region 33918	957 bp upstream