rs220566899 SNP Detail

Summary

• ID
  rs220566899
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32876328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTACTTC CTAGCCCACA
  TCCCTGAGAT GCTCGAATCT TATGGCTTTC TCTGCTCCAG CTGTTTTCTT GTGGTCTCTC
  CTGGATTCTT TCCCTGTGAC TAATTCTCAT TTTTTTCTCT CTCCTGCCCC ATTTCCTGGA
  AGGAAGTCCT GCCCTATCCT CTCCCCTGAC CAGTTATTCA TCAGATTTTA TTGACAAATC
  R
  GGGAATAATT CAGGAGCAAT GTTTTTACAA CATTGAGACA GGAGATAGTT AGAATACAGA
  CTGCAACCAG ATATGGGGGC ATAGAAATCA AGATTGAATT ACACAGCGCA CAGTAACATG
  CCTACACATT CCAAATTCTA AGGGGGTAGG TATGGGCAGA TAAACGTCCA TGTTCCTTTG
  GTCTGGGTGG GATGCCTAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398036762	MGP_WTSI_17_32794299	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	A	G	G	G	G	A	G	A	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220566899					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	A	G	G	G	G	A	G	A	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398036762	MGP_WTSI_17_32794299	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32876328 () rs orientation: forward

Symbol	Name	Function Class
Cyp4f40	cytochrome P450, family 4, subfamily f, polypeptide 40	1546 bp upstream
Gm65897	predicted gene, 65897	74 bp downstream
Rr525786	regulatory region 525786	774 bp proximal
Rr525787	regulatory region 525787	1317 bp proximal
Rr525788	regulatory region 525788	1557 bp proximal
Tssr143725	transcription start site region 143725	1524 bp upstream
Tssr143726	transcription start site region 143726	1612 bp upstream
Tssr143727	transcription start site region 143727	1635 bp upstream
Tssr143728	transcription start site region 143728	1655 bp upstream
Tssr143729	transcription start site region 143729	1667 bp upstream
Tssr143730	transcription start site region 143730	1690 bp upstream
Tssr143731	transcription start site region 143731	1712 bp upstream
Tssr143732	transcription start site region 143732	1726 bp upstream