rs220568950 SNP Detail

Summary

• ID
  rs220568950
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:69869773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    Attatttat ttagagacac tctcactatg
  tagccctaac tggtgtggaa ctcttctctg tagaccaggc tggcttcaga ttcgagagat
  atgcctgtat ctcccttgaa tgcagggatt aaaagtgtgt gctaTTgcca gccgtgatgg
  Y
  gcacgtcttt aatcccagca gtagggaggc agaggccagc ctggtctaca gagttctagg
  acagccaggg ctatacagag aaaccctgtc tcataaagcc caaaAAAGTG TGTGCTATTA
  CAGTGATCTT ATGCCATTTT TTTAAATTGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323732453	CHEV_11_69792449	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220568950					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69869773 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3163	CpG island 3163	1132 bp proximal
Elp5	elongator acetyltransferase complex subunit 5	Intron
Gm56228	predicted gene, 56228	1745 bp upstream
Rr369263	regulatory region 369263	956 bp upstream
Rr402684	regulatory region 402684	1569 bp upstream
Rr450182	regulatory region 450182	1325 bp proximal
Rr450183	regulatory region 450183	1719 bp proximal
Tssr102587	transcription start site region 102587	1804 bp upstream
Tssr102588	transcription start site region 102588	1821 bp upstream
Tssr102589	transcription start site region 102589	1833 bp upstream
Tssr102590	transcription start site region 102590	1883 bp upstream
Tssr108900	transcription start site region 108900	1271 bp downstream
Tssr108901	transcription start site region 108901	1286 bp downstream
Tssr108902	transcription start site region 108902	1327 bp downstream
Tssr108903	transcription start site region 108903	1521 bp downstream