rs220571656 SNP Detail

Summary

• ID
  rs220571656
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57172336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATTCAGG TGGGGATTTA
  CTGAATAGAA GGTAGGTCTG GGTTACACAG TGAGTTCCAA GCCAGCCTGG GCTACAGTGT
  TACAGTCTCT CTAAAACACA CACACACACA CGCACACGCA CACGCACACG CACATATTCC
  AAGCCAGCCT GGGCTACAGT GTGACAGTCT CTCTAAAACA CGCACACGCA CACGCACATG
  M
  ACATATTCCA AGCCAGCCTG GGCTACAGTG TGACAGTCTC TCTAAAACAC ACGCACACAC
  ACACACACAC ACACACCAAT GCAAAAATAG AAAAGTTGTA AGAGGGCTCC ACTTTGCACC
  ATCCTGACTC TACACAGGCT TGAACCGGGC ACATGCCCTT CCCCCATACC TCCCCCGACT
  CCCCTCCAAC TCCCAACACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NZB/BlNJ	PWK/PhJ	SPRET/EiJ	ZALENDE/EiJ
ss377685794	MGP_WTSI_9_57112860	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NZB/BlNJ	PWK/PhJ	SPRET/EiJ	ZALENDE/EiJ
rs220571656					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377685794	MGP_WTSI_9_57112860	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57172336 () rs orientation: forward

Symbol	Name	Function Class
Gm68485	predicted gene, 68485	211 bp downstream
Gm68491	predicted gene, 68491	within coordinates
Rr679624	regulatory region 679624	1951 bp distal
Rr679625	regulatory region 679625	91 bp proximal
Tssr89773	transcription start site region 89773	736 bp downstream
Tssr89774	transcription start site region 89774	754 bp downstream