rs220574342 SNP Detail

Summary

• ID
  rs220574342
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:68798751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGCCTCT TCTCCTCAGT
  AGTGTTTGTC AGAGGATCCC TGGAATTCAA GTCTAGGGAG ACTAGAGCAA GAGGCATGTG
  CTTCTATTTA GATGTAAAGG GAGAAAAACC TTCCCTTAAG AACTCCCCAA CTGCCTCACA
  TCTGGCCCCC CAAGAACTAT GTTATGTCAG GGACTGCTGA CATAACATAG TTCTTGGGGG
  K
  CCAGATGTGA GGCTCAGACT TGGGCCACAC TGCATGGCCA GACCGGCATG GGGCTCAGGG
  TCAGAAGCAG GATCTACCCT TATGAGCTTG CTCTGCTGGG GTTGTGCTCT GTCTTCAGCA
  TCAAGGAGCA CACAGATGGT GTTGCCTGCT GCCTTTCGAA GCTTCTGCCT CAGAAAGCAG
  CCATGCGAGG GAGACTGCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394433384	MGP_WTSI_15_68757332	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220574342					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394433384	MGP_WTSI_15_68757332	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:68798751 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7148	CpG island 7148	889 bp proximal
Khdrbs3	KH domain containing, RNA binding, signal transduction associated 3	1518 bp upstream
Rr503804	regulatory region 503804	1028 bp proximal
Rr503805	regulatory region 503805	1409 bp proximal
Rr503806	regulatory region 503806	1806 bp proximal
Tssr131505	transcription start site region 131505	1478 bp upstream
Tssr131506	transcription start site region 131506	1493 bp upstream
Tssr131507	transcription start site region 131507	1512 bp upstream
Tssr131508	transcription start site region 131508	1521 bp upstream
Tssr131509	transcription start site region 131509	1560 bp upstream
Tssr131510	transcription start site region 131510	1801 bp upstream